cpa.ComPertAPI.get_response

ComPertAPI.get_response(doses=None, contvar_min=None, contvar_max=None, n_points=50, ncells_max=100, perturbations=None, control_name='test_control')

Decoded dose response data frame.

Parameters:

dataset CompPertDataset

The file location of the spreadsheet

doses np.array (default: None)

Doses values. If None, default values will be generated on a grid: n_points in range [contvar_min, contvar_max].

contvar_min float (default: 0)

Minimum dose value to generate for default option.

contvar_max float (default: 0)

Maximum dose value to generate for default option.

n_points int (default: 100)

Number of dose points to generate for default option.

perturbations list (default: None)

List of perturbations for dose response

Returns:

pd.DataFrame of decoded response values of genes and average response.