cpa.CPA.predict

CPA.predict(adata=None, indices=None, batch_size=32, n_samples=20, return_mean=True)

Counterfactual-friendly gene expression prediction

To produce counterfactuals, save adata.X to adata.obsm[‘X_true’] and set it to control cells gene expression.

For the case of reconstruction, you can pass original adata without any further modifications.

Returns:

None (predictions are saved to adata.obsm[f’CPA_pred’])