cpa.ComPertAPI.evaluate_r2

ComPertAPI.evaluate_r2(perturbations=None, control_adata_key='test')

Measures different quality metrics about an ComPert autoencoder, when tasked to translate some genes_control into each of the drug/cell_type combinations described in dataset.

Considered metrics are R2 score about means and variances for all genes, as well as R2 score about means and variances about differentially expressed (_de) genes.